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GNPS - Feature Based Molecular Networking - MZMine2 Tutorial

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GNPS - Feature Based Molecular Networking - MZMine2 Tutorial

30,478 views October 26, 2018 30:58

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ChannelDorrestein Lab

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Checkout GNPS to perform Molecular Networking, Spectral Library Search, Molecular BLAST, and more!

gnps.ucsd.edu

ccms-ucsd.github.io/GNPSDocumentation/

In this tutorial we highlight how to use Feature Based Molecular Networking (using MZMine2) to uncover unique metabolism of molecules found in the American Gut Project.

Checkout the accompanying written tutorial:

ccms-ucsd.github.io/GNPSDocumentation/tutorials…

and detail documentation on MZmine2 feature detection:

ccms-ucsd.github.io/GNPSDocumentation/featureba…


Download the dataset here:

massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=de…

Download MZmine2 here:

github.com/mzmine/mzmine2/releases

About this tutorial

Dorrestein Lab published this 30:58 video tutorial on October 26, 2018. It has been watched 30,478 times on YouTube.

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October 26, 2018
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Further reading

  • FBMN with MZmine - GNPS Documentation ccms-ucsd.github.io

    The video tutorial below about MZmine2 processing for Feature Based Molecular Networking. Note that this video is slighlty outdatted , so please refer to the steps described in this documentation. The video tutorial bel…

  • Feature-Based Molecular Networking (FBMN) with MZmine2 ... ccms-ucsd.github.io

    Feature-Based Molecular Networking (FBMN) with MZmine2 - Microbiome Molecules in Fecal Samples in American Gut Project. In this tutorial you will be guided into running MZmine2 for the Feature Based Molecular Network (F…

  • FBMN analysis at GNPS - GNPS Documentation ccms-ucsd.github.io

    Run the Feature Based Molecular Networking using MZmine2 outputted files along with a metadata table. See the workflow here (Note that you must be logged in GNPS first). Explore Molecular Networking results briefly in G…

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